HL_6Z6J_047

3D structure

PDB id

6Z6J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of yeast Lso2 bound to 80S ribosomes under native condition

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

AGAAAGU

Length

7 nucleotides

Bulged bases

6Z6J|1|C1|G|2169

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Z6J_047 not in the Motif Atlas

Homologous match to HL_8C3A_047

Geometric discrepancy: 0.1218

The information below is about HL_8C3A_047

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6Z6J|1|C1|A|2164
6Z6J|1|C1|G|2165
6Z6J|1|C1|A|2166
6Z6J|1|C1|A|2167
6Z6J|1|C1|A|2168
6Z6J|1|C1|G|2169
6Z6J|1|C1|U|2170

Current chains

Chain C1

25S rRNA

Nearby chains

Chain LA

60S ribosomal protein L2-A

Chain LG

60S ribosomal protein L8-A

Chain LN

60S ribosomal protein L15-A