HL_6Z6J_055

3D structure

PDB id

6Z6J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of yeast Lso2 bound to 80S ribosomes under native condition

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

6Z6J|1|C1|G|2618

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Z6J_055 not in the Motif Atlas

Homologous match to HL_8C3A_055

Geometric discrepancy: 0.1204

The information below is about HL_8C3A_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47383.2

Basepair signature

cWW-F-F-cWW-F-F

Number of instances in this motif group

11

Unit IDs

6Z6J|1|C1|C|2616
6Z6J|1|C1|U|2617
6Z6J|1|C1|G|2618
6Z6J|1|C1|G|2619
6Z6J|1|C1|G|2620
6Z6J|1|C1|G|2621
6Z6J|1|C1|C|2622
6Z6J|1|C1|G|2623
6Z6J|1|C1|G|2624

Current chains

Chain C1

25S rRNA

Nearby chains

Chain LI

60S ribosomal protein L10

Chain Lb

60S ribosomal protein L29