HL_6Z6J_057

3D structure

PDB id

6Z6J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of yeast Lso2 bound to 80S ribosomes under native condition

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

AACAGAAAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Z6J_057 not in the Motif Atlas

Homologous match to HL_8C3A_057

Geometric discrepancy: 0.1486

The information below is about HL_8C3A_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_72777.1

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

6

Unit IDs

6Z6J|1|C1|A|2673
6Z6J|1|C1|A|2674
6Z6J|1|C1|C|2675
6Z6J|1|C1|A|2676
6Z6J|1|C1|G|2677
6Z6J|1|C1|A|2678
6Z6J|1|C1|A|2679
6Z6J|1|C1|A|2680
6Z6J|1|C1|U|2681

Current chains

Chain C1

25S rRNA

Nearby chains

Chain C5

Protein LSO2

Chain LJ

60S ribosomal protein L11-A