HL_6Z6J_068

3D structure

PDB id

6Z6J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of yeast Lso2 bound to 80S ribosomes under native condition

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUGAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

6Z6J|1|C1|G|3116, 6Z6J|1|C1|C|3120

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Z6J_068 not in the Motif Atlas

Homologous match to HL_8C3A_068

Geometric discrepancy: 0.0946

The information below is about HL_8C3A_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.9

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

6Z6J|1|C1|C|3110
6Z6J|1|C1|U|3111
6Z6J|1|C1|G|3112
6Z6J|1|C1|A|3113
6Z6J|1|C1|A|3114
6Z6J|1|C1|C|3115
6Z6J|1|C1|G|3116
6Z6J|1|C1|C|3117
6Z6J|1|C1|C|3118
6Z6J|1|C1|U|3119
6Z6J|1|C1|C|3120
6Z6J|1|C1|U|3121
6Z6J|1|C1|A|3122
6Z6J|1|C1|A|3123
6Z6J|1|C1|G|3124

Current chains

Chain C1

25S rRNA

Nearby chains

Chain LH

60S ribosomal protein L9-A

Chain LO

60S ribosomal protein L16-A

Chain Lm

Ubiquitin-60S ribosomal protein L40