HL_6Z6J_071

3D structure

PDB id

6Z6J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of yeast Lso2 bound to 80S ribosomes under native condition

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GUAUACGAC

Length

9 nucleotides

Bulged bases

6Z6J|1|C1|U|3304

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Z6J_071 not in the Motif Atlas

Homologous match to HL_8C3A_071

Geometric discrepancy: 0.0966

The information below is about HL_8C3A_071

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.4

Basepair signature

cWW-cSW-F-F-F-cWW

Number of instances in this motif group

9

Unit IDs

6Z6J|1|C1|G|3303
6Z6J|1|C1|U|3304
6Z6J|1|C1|A|3305
6Z6J|1|C1|U|3306
6Z6J|1|C1|A|3307
6Z6J|1|C1|C|3308
6Z6J|1|C1|G|3309
6Z6J|1|C1|A|3310
6Z6J|1|C1|C|3311

Current chains

Chain C1

25S rRNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain LP

60S ribosomal protein L17-A

Chain Ld

60S ribosomal protein L31-A