HL_6Z6J_072

3D structure

PDB id

6Z6J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of yeast Lso2 bound to 80S ribosomes under native condition

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUUG

Length

4 nucleotides

Bulged bases

6Z6J|1|C1|U|3351

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Z6J_072 not in the Motif Atlas

Geometric match to HL_4V88_192

Geometric discrepancy: 0.1265

The information below is about HL_4V88_192

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_43793.1

Basepair signature

cWW-F

Number of instances in this motif group

50

Unit IDs

6Z6J|1|C1|C|3350
6Z6J|1|C1|U|3351
6Z6J|1|C1|U|3352
6Z6J|1|C1|G|3353

Current chains

Chain C1

25S rRNA

Nearby chains

Chain SI

40S ribosomal protein S8-A