3D structure

PDB id
6Z6J (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of yeast Lso2 bound to 80S ribosomes under native condition
Experimental method
ELECTRON MICROSCOPY
Resolution
3.4 Å

Loop

Sequence
GCUAAAC
Length
7 nucleotides
Bulged bases
None detected
QA status
Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6Z6J_088 not in the Motif Atlas
Geometric match to HL_2ZZM_002
Geometric discrepancy: 0.3169
The information below is about HL_2ZZM_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_13963.3
Basepair signature
cWW-F-F
Number of instances in this motif group
4

Unit IDs

6Z6J|1|C2|G|703
6Z6J|1|C2|C|704
6Z6J|1|C2|U|705
6Z6J|1|C2|A|706
6Z6J|1|C2|A|733
6Z6J|1|C2|A|734
6Z6J|1|C2|C|735

Current chains

Chain C2
18S rRNA

Nearby chains

No other chains within 10Å

Coloring options:


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