HL_6Z6J_088

3D structure

PDB id

6Z6J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of yeast Lso2 bound to 80S ribosomes under native condition

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GCUAAAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Z6J_088 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.3169

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.3

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

6Z6J|1|C2|G|703
6Z6J|1|C2|C|704
6Z6J|1|C2|U|705
6Z6J|1|C2|A|706
6Z6J|1|C2|A|733
6Z6J|1|C2|A|734
6Z6J|1|C2|C|735

Current chains

Chain C2

18S rRNA

Nearby chains