HL_6Z6J_088
3D structure
- PDB id
- 6Z6J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of yeast Lso2 bound to 80S ribosomes under native condition
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- GCUAAAC
- Length
- 7 nucleotides
- Bulged bases
- None detected
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6Z6J_088 not in the Motif Atlas
- Geometric match to HL_2ZZM_002
- Geometric discrepancy: 0.3169
- The information below is about HL_2ZZM_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_13963.3
- Basepair signature
- cWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
6Z6J|1|C2|G|703
6Z6J|1|C2|C|704
6Z6J|1|C2|U|705
6Z6J|1|C2|A|706
6Z6J|1|C2|A|733
6Z6J|1|C2|A|734
6Z6J|1|C2|C|735
Current chains
- Chain C2
- 18S rRNA
Nearby chains
No other chains within 10ÅColoring options: