HL_6Z6J_114
3D structure
- PDB id
- 6Z6J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of yeast Lso2 bound to 80S ribosomes under native condition
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- CUGAACUUAAGCAUAUCAAUAAG
- Length
- 23 nucleotides
- Bulged bases
- 6Z6J|1|C1|A|40, 6Z6J|1|C1|A|43, 6Z6J|1|C1|A|49
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6Z6J|1|C1|C|31
6Z6J|1|C1|U|32
6Z6J|1|C1|G|33
6Z6J|1|C1|A|34
6Z6J|1|C1|A|35
6Z6J|1|C1|C|36
6Z6J|1|C1|U|37
6Z6J|1|C1|U|38
6Z6J|1|C1|A|39
6Z6J|1|C1|A|40
6Z6J|1|C1|G|41
6Z6J|1|C1|C|42
6Z6J|1|C1|A|43
6Z6J|1|C1|U|44
6Z6J|1|C1|A|45
6Z6J|1|C1|U|46
6Z6J|1|C1|C|47
6Z6J|1|C1|A|48
6Z6J|1|C1|A|49
6Z6J|1|C1|U|50
6Z6J|1|C1|A|51
6Z6J|1|C1|A|52
6Z6J|1|C1|G|53
Current chains
- Chain C1
- 25S rRNA
Nearby chains
- Chain LL
- 60S ribosomal protein L13-A
- Chain LN
- 60S ribosomal protein L15-A
- Chain La
- 60S ribosomal protein L28
- Chain Lj
- 60S ribosomal protein L37-A
- Chain Lo
- 60S ribosomal protein L42-A
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