HL_6Z6K_013

3D structure

PDB id

6Z6K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of yeast reconstituted Lso2 bound to 80S ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGUAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Z6K_013 not in the Motif Atlas

Homologous match to HL_5TBW_013

Geometric discrepancy: 0.3028

The information below is about HL_5TBW_013

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6Z6K|1|C1|C|599
6Z6K|1|C1|G|600
6Z6K|1|C1|U|601
6Z6K|1|C1|A|602
6Z6K|1|C1|A|603
6Z6K|1|C1|G|604

Current chains

Chain C1

25S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4-A

Chain LF

60S ribosomal protein L7-A