HL_6Z6K_029

3D structure

PDB id

6Z6K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of yeast reconstituted Lso2 bound to 80S ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UUAUGAUG

Length

8 nucleotides

Bulged bases

6Z6K|1|C1|U|1348, 6Z6K|1|C1|A|1352, 6Z6K|1|C1|U|1353, 6Z6K|1|C1|G|1354, 6Z6K|1|C1|U|1356

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6Z6K|1|C1|U|1347
6Z6K|1|C1|U|1348
6Z6K|1|C1|A|1352
6Z6K|1|C1|U|1353
6Z6K|1|C1|G|1354
6Z6K|1|C1|A|1355
6Z6K|1|C1|U|1356
6Z6K|1|C1|G|1357

Current chains

Chain C1

25S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4-A

Chain LE

60S ribosomal protein L6-A

Chain LQ

60S ribosomal protein L18-A

Chain Le

60S ribosomal protein L32