HL_6Z6K_033

3D structure

PDB id

6Z6K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of yeast reconstituted Lso2 bound to 80S ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GAAGCU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Z6K_033 not in the Motif Atlas

Homologous match to HL_8C3A_033

Geometric discrepancy: 0.1083

The information below is about HL_8C3A_033

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6Z6K|1|C1|G|1544
6Z6K|1|C1|A|1545
6Z6K|1|C1|A|1546
6Z6K|1|C1|G|1547
6Z6K|1|C1|C|1548
6Z6K|1|C1|U|1549

Current chains

Chain C1

25S rRNA

Nearby chains

Chain LN

60S ribosomal protein L15-A

Chain Lj

60S ribosomal protein L37-A