HL_6Z6K_036

3D structure

PDB id

6Z6K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of yeast reconstituted Lso2 bound to 80S ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGUAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Z6K_036 not in the Motif Atlas

Homologous match to HL_8C3A_036

Geometric discrepancy: 0.0947

The information below is about HL_8C3A_036

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6Z6K|1|C1|G|1634
6Z6K|1|C1|G|1635
6Z6K|1|C1|U|1636
6Z6K|1|C1|A|1637
6Z6K|1|C1|A|1638
6Z6K|1|C1|C|1639

Current chains

Chain C1

25S rRNA

Nearby chains

Chain LZ

60S ribosomal protein L27-A

Chain Lg

60S ribosomal protein L34-A