HL_6Z6K_052

3D structure

PDB id

6Z6K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of yeast reconstituted Lso2 bound to 80S ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

AGUUU

Length

5 nucleotides

Bulged bases

6Z6K|1|C1|U|2504

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Z6K_052 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.3309

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.2

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

6Z6K|1|C1|A|2441
6Z6K|1|C1|G|2442
6Z6K|1|C1|U|2504
6Z6K|1|C1|U|2505
6Z6K|1|C1|U|2506

Current chains

Chain C1

25S rRNA

Nearby chains

Chain Li

60S ribosomal protein L36-A

Chain SB

40S ribosomal protein S1-A