HL_6Z6K_066

3D structure

PDB id

6Z6K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of yeast reconstituted Lso2 bound to 80S ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Z6K_066 not in the Motif Atlas

Geometric match to HL_2R8S_001

Geometric discrepancy: 0.1145

The information below is about HL_2R8S_001

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

6Z6K|1|C1|C|3025
6Z6K|1|C1|G|3026
6Z6K|1|C1|A|3027
6Z6K|1|C1|G|3028
6Z6K|1|C1|A|3029
6Z6K|1|C1|G|3030

Current chains

Chain C1

25S rRNA

Nearby chains

Chain LH

60S ribosomal protein L9-A

Chain Lm

Ubiquitin-60S ribosomal protein L40