HL_6Z6K_086

3D structure

PDB id

6Z6K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of yeast reconstituted Lso2 bound to 80S ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

AAUGUAAAUACCU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Z6K_086 not in the Motif Atlas

Geometric match to HL_4V88_199

Geometric discrepancy: 0.1284

The information below is about HL_4V88_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_05304.1

Basepair signature

cWW-cWW-F-F-tSH-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

6Z6K|1|C2|A|520
6Z6K|1|C2|A|521
6Z6K|1|C2|U|522
6Z6K|1|C2|G|523
6Z6K|1|C2|U|524
6Z6K|1|C2|A|525
6Z6K|1|C2|A|526
6Z6K|1|C2|A|527
6Z6K|1|C2|U|528
6Z6K|1|C2|A|529
6Z6K|1|C2|C|530
6Z6K|1|C2|C|531
6Z6K|1|C2|U|532

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SJ

40S ribosomal protein S9-A

Chain SY

40S ribosomal protein S24-A