HL_6Z6K_109
3D structure
- PDB id
- 6Z6K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of yeast reconstituted Lso2 bound to 80S ribosomes
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- UGAAUUGCAGAAUUCCGUGAA
- Length
- 21 nucleotides
- Bulged bases
- 6Z6K|1|C3|U|81, 6Z6K|1|C3|C|84, 6Z6K|1|C3|U|86
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6Z6K_109 not in the Motif Atlas
- Homologous match to HL_8P9A_187
- Geometric discrepancy: 0.4786
- The information below is about HL_8P9A_187
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_51921.1
- Basepair signature
- cWW-tSH-tSS-tHS-F-F-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
6Z6K|1|C3|U|69
6Z6K|1|C3|G|70
6Z6K|1|C3|A|71
6Z6K|1|C3|A|72
6Z6K|1|C3|U|73
6Z6K|1|C3|U|74
6Z6K|1|C3|G|75
6Z6K|1|C3|C|76
6Z6K|1|C3|A|77
6Z6K|1|C3|G|78
6Z6K|1|C3|A|79
6Z6K|1|C3|A|80
6Z6K|1|C3|U|81
6Z6K|1|C3|U|82
6Z6K|1|C3|C|83
6Z6K|1|C3|C|84
6Z6K|1|C3|G|85
6Z6K|1|C3|U|86
6Z6K|1|C3|G|87
6Z6K|1|C3|A|88
6Z6K|1|C3|A|89
Current chains
- Chain C3
- 5.8S rRNA
Nearby chains
- Chain C1
- Large subunit ribosomal RNA; LSU rRNA
- Chain LY
- 60S ribosomal protein L26-A
- Chain Lh
- 60S ribosomal protein L35-A
- Chain Ll
- 60S ribosomal protein L39
Coloring options: