HL_6Z6K_111

3D structure

PDB id

6Z6K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of yeast reconstituted Lso2 bound to 80S ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GUAUUC

Length

6 nucleotides

Bulged bases

6Z6K|1|C3|U|125, 6Z6K|1|C3|U|127

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Z6K_111 not in the Motif Atlas

Homologous match to HL_5TBW_076

Geometric discrepancy: 0.2044

The information below is about HL_5TBW_076

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_45177.3

Basepair signature

cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

6Z6K|1|C3|G|124
6Z6K|1|C3|U|125
6Z6K|1|C3|A|126
6Z6K|1|C3|U|127
6Z6K|1|C3|U|128
6Z6K|1|C3|C|129

Current chains

Chain C3

5.8S rRNA

Nearby chains

Chain C1

Large subunit ribosomal RNA; LSU rRNA