HL_6Z6K_114

3D structure

PDB id

6Z6K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of yeast reconstituted Lso2 bound to 80S ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GCCUCGGU

Length

8 nucleotides

Bulged bases

6Z6K|1|C1|U|545, 6Z6K|1|C1|G|547

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Z6K_114 not in the Motif Atlas

Geometric match to HL_1KH6_003

Geometric discrepancy: 0.3347

The information below is about HL_1KH6_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27483.1

Basepair signature

cWW-F

Number of instances in this motif group

2

Unit IDs

6Z6K|1|C1|G|542
6Z6K|1|C1|C|543
6Z6K|1|C1|C|544
6Z6K|1|C1|U|545
6Z6K|1|C1|C|546
6Z6K|1|C1|G|547
6Z6K|1|C1|G|548
6Z6K|1|C1|U|549

Current chains

Chain C1

25S rRNA

Nearby chains