HL_6Z6L_043

3D structure

PDB id

6Z6L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of human CCDC124 bound to 80S ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUUCUCUUU

Length

9 nucleotides

Bulged bases

6Z6L|1|L5|U|2631

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Z6L_043 not in the Motif Atlas

Homologous match to HL_8C3A_037

Geometric discrepancy: 0.1921

The information below is about HL_8C3A_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01927.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

6Z6L|1|L5|G|2624
6Z6L|1|L5|U|2625
6Z6L|1|L5|U|2626
6Z6L|1|L5|C|2627
6Z6L|1|L5|U|2628
6Z6L|1|L5|C|2629
6Z6L|1|L5|U|2630
6Z6L|1|L5|U|2631
6Z6L|1|L5|U|2632

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LR

60S ribosomal protein L19

Chain LU

60S ribosomal protein L22