Loop HL_6Z6L

3D structure

PDB id: 6Z6L (explore in PDB, NAKB, or RNA 3D Hub)
Description: Cryo-EM structure of human CCDC124 bound to 80S ribosomes
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å

Loop

Sequence: CAUGAGAGGUGUAGAAUAAGUGGGAGGCCCGGGCCGCCGGUGAAAUACCACUACUCUGAUCGCGGGGCGGGGUCCGCCGGCCCUGCGGGCCGCCGGUGAAAUACCACUACUCUGAUC*G
Length: 118 nucleotides
Bulged bases: 6Z6L|1|L5|A|3962, 6Z6L|1|L5|G|4035, 6Z6L|1|L5|C|4038, 6Z6L|1|L5|U|4044, 6Z6L|1|L5|A|4053, 6Z6L|1|L5|C|4054, 6Z6L|1|L5|U|4058, 6Z6L|1|L5|C|4010, 6Z6L|1|L5|G|4011, 6Z6L|1|L5|G|4012, 6Z6L|1|L5|G|4013, 6Z6L|1|L5|G|4014, 6Z6L|1|L5|C|4015, 6Z6L|1|L5|G|4016, 6Z6L|1|L5|G|4017, 6Z6L|1|L5|G|4018, 6Z6L|1|L5|G|4019, 6Z6L|1|L5|U|4020, 6Z6L|1|L5|C|4021, 6Z6L|1|L5|C|4022, 6Z6L|1|L5|G|4023, 6Z6L|1|L5|C|4024, 6Z6L|1|L5|C|4025, 6Z6L|1|L5|G|4026, 6Z6L|1|L5|G|4027, 6Z6L|1|L5|C|4028, 6Z6L|1|L5|C|4029, 6Z6L|1|L5|C|4030, 6Z6L|1|L5|U|4031, 6Z6L|1|L5|G|4032, 6Z6L|1|L5|C|4033, 6Z6L|1|L5|G|4034, 6Z6L|1|L5|G|4035, 6Z6L|1|L5|C|4038, 6Z6L|1|L5|G|4039, 6Z6L|1|L5|G|4042, 6Z6L|1|L5|U|4044, 6Z6L|1|L5|G|4045, 6Z6L|1|L5|A|4047, 6Z6L|1|L5|C|4051, 6Z6L|1|L5|C|4052, 6Z6L|1|L5|A|4053, 6Z6L|1|L5|C|4054, 6Z6L|1|L5|U|4058
QA status: Missing nucleotides

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

6Z6L|1|L5|C|3948
6Z6L|1|L5|A|3949
6Z6L|1|L5|U|3950
6Z6L|1|L5|G|3951
6Z6L|1|L5|A|3952
6Z6L|1|L5|G|3953
6Z6L|1|L5|A|3954
6Z6L|1|L5|G|3955
6Z6L|1|L5|G|3956
6Z6L|1|L5|U|3957
6Z6L|1|L5|G|3958
6Z6L|1|L5|U|3959
6Z6L|1|L5|A|3960
6Z6L|1|L5|G|3961
6Z6L|1|L5|A|3962
6Z6L|1|L5|A|3963
6Z6L|1|L5|U|3964
6Z6L|1|L5|A|3965
6Z6L|1|L5|A|3966
6Z6L|1|L5|G|3967
6Z6L|1|L5|U|3968
6Z6L|1|L5|G|3969
6Z6L|1|L5|G|3970
6Z6L|1|L5|G|3971
6Z6L|1|L5|A|3972
6Z6L|1|L5|G|3973
6Z6L|1|L5|G|3974
6Z6L|1|L5|C|3975
6Z6L|1|L5|C|3976
6Z6L|1|L5|C|3977
6Z6L|1|L5|G|4034
6Z6L|1|L5|G|4035
6Z6L|1|L5|G|4036
6Z6L|1|L5|C|4037
6Z6L|1|L5|C|4038
6Z6L|1|L5|G|4039
6Z6L|1|L5|C|4040
6Z6L|1|L5|C|4041
6Z6L|1|L5|G|4042
6Z6L|1|L5|G|4043
6Z6L|1|L5|U|4044
6Z6L|1|L5|G|4045
6Z6L|1|L5|A|4046
6Z6L|1|L5|A|4047
6Z6L|1|L5|A|4048
6Z6L|1|L5|U|4049
6Z6L|1|L5|A|4050
6Z6L|1|L5|C|4051
6Z6L|1|L5|C|4052
6Z6L|1|L5|A|4053
6Z6L|1|L5|C|4054
6Z6L|1|L5|U|4055
6Z6L|1|L5|A|4056
6Z6L|1|L5|C|4057
6Z6L|1|L5|U|4058
6Z6L|1|L5|C|4059
6Z6L|1|L5|U|4060
6Z6L|1|L5|G|4061
6Z6L|1|L5|A|4062
6Z6L|1|L5|U|4063
6Z6L|1|L5|C|4064
6Z6L|1|L5|G|4065
6Z6L|1|L5|C|4010
6Z6L|1|L5|G|4011
6Z6L|1|L5|G|4012
6Z6L|1|L5|G|4013
6Z6L|1|L5|G|4014
6Z6L|1|L5|C|4015
6Z6L|1|L5|G|4016
6Z6L|1|L5|G|4017
6Z6L|1|L5|G|4018
6Z6L|1|L5|G|4019
6Z6L|1|L5|U|4020
6Z6L|1|L5|C|4021
6Z6L|1|L5|C|4022
6Z6L|1|L5|G|4023
6Z6L|1|L5|C|4024
6Z6L|1|L5|C|4025
6Z6L|1|L5|G|4026
6Z6L|1|L5|G|4027
6Z6L|1|L5|C|4028
6Z6L|1|L5|C|4029
6Z6L|1|L5|C|4030
6Z6L|1|L5|U|4031
6Z6L|1|L5|G|4032
6Z6L|1|L5|C|4033
6Z6L|1|L5|G|4034
6Z6L|1|L5|G|4035
6Z6L|1|L5|G|4036
6Z6L|1|L5|C|4037
6Z6L|1|L5|C|4038
6Z6L|1|L5|G|4039
6Z6L|1|L5|C|4040
6Z6L|1|L5|C|4041
6Z6L|1|L5|G|4042
6Z6L|1|L5|G|4043
6Z6L|1|L5|U|4044
6Z6L|1|L5|G|4045
6Z6L|1|L5|A|4046
6Z6L|1|L5|A|4047
6Z6L|1|L5|A|4048
6Z6L|1|L5|U|4049
6Z6L|1|L5|A|4050
6Z6L|1|L5|C|4051
6Z6L|1|L5|C|4052
6Z6L|1|L5|A|4053
6Z6L|1|L5|C|4054
6Z6L|1|L5|U|4055
6Z6L|1|L5|A|4056
6Z6L|1|L5|C|4057
6Z6L|1|L5|U|4058
6Z6L|1|L5|C|4059
6Z6L|1|L5|U|4060
6Z6L|1|L5|G|4061
6Z6L|1|L5|A|4062
6Z6L|1|L5|U|4063
6Z6L|1|L5|C|4064
*
6Z6L|1|L5|G|4065

Current chains

Chain L5: 28S rRNA

Nearby chains

Chain CC: Transfer RNA; tRNA
Chain Li: 60S ribosomal protein L36
Chain Lz: 60S ribosomal protein L10a
Chain SB: 40S ribosomal protein S3a

HL_6Z6L_058