HL_6Z6L_063

3D structure

PDB id

6Z6L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of human CCDC124 bound to 80S ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GACAGAAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Z6L_063 not in the Motif Atlas

Homologous match to HL_8C3A_057

Geometric discrepancy: 0.1143

The information below is about HL_8C3A_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_72777.1

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

6

Unit IDs

6Z6L|1|L5|G|4250
6Z6L|1|L5|A|4251
6Z6L|1|L5|C|4252
6Z6L|1|L5|A|4253
6Z6L|1|L5|G|4254
6Z6L|1|L5|A|4255
6Z6L|1|L5|A|4256
6Z6L|1|L5|A|4257
6Z6L|1|L5|C|4258

Current chains

Chain L5

28S rRNA

Nearby chains

Chain CE

Coiled-coil domain-containing protein 124

Chain LJ

60S ribosomal protein L11