HL_6Z6L_074

3D structure

PDB id

6Z6L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of human CCDC124 bound to 80S ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUGAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

6Z6L|1|L5|G|4694, 6Z6L|1|L5|C|4698

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Z6L_074 not in the Motif Atlas

Homologous match to HL_8C3A_068

Geometric discrepancy: 0.0785

The information below is about HL_8C3A_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.9

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

6Z6L|1|L5|C|4688
6Z6L|1|L5|U|4689
6Z6L|1|L5|G|4690
6Z6L|1|L5|A|4691
6Z6L|1|L5|A|4692
6Z6L|1|L5|C|4693
6Z6L|1|L5|G|4694
6Z6L|1|L5|C|4695
6Z6L|1|L5|C|4696
6Z6L|1|L5|U|4697
6Z6L|1|L5|C|4698
6Z6L|1|L5|U|4699
6Z6L|1|L5|A|4700
6Z6L|1|L5|A|4701
6Z6L|1|L5|G|4702

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LH

60S ribosomal protein L9

Chain LO

60S ribosomal protein L13a

Chain Lm

Ubiquitin-60S ribosomal protein L40