HL_6Z6L_077

3D structure

PDB id

6Z6L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of human CCDC124 bound to 80S ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUAGACGAC

Length

9 nucleotides

Bulged bases

6Z6L|1|L5|U|4976

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Z6L_077 not in the Motif Atlas

Geometric match to HL_5J7L_201

Geometric discrepancy: 0.091

The information below is about HL_5J7L_201

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.6

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

6Z6L|1|L5|G|4975
6Z6L|1|L5|U|4976
6Z6L|1|L5|A|4977
6Z6L|1|L5|G|4978
6Z6L|1|L5|A|4979
6Z6L|1|L5|C|4980
6Z6L|1|L5|G|4981
6Z6L|1|L5|A|4982
6Z6L|1|L5|C|4983

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain LP

60S ribosomal protein L17

Chain Ld

60S ribosomal protein L31