HL_6Z6L_084

3D structure

PDB id

6Z6L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of human CCDC124 bound to 80S ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGUUCCUCC

Length

9 nucleotides

Bulged bases

6Z6L|1|L8|C|125

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Z6L_084 not in the Motif Atlas

Geometric match to HL_5ID6_001

Geometric discrepancy: 0.121

The information below is about HL_5ID6_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.4

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

6Z6L|1|L8|G|121
6Z6L|1|L8|G|122
6Z6L|1|L8|U|123
6Z6L|1|L8|U|124
6Z6L|1|L8|C|125
6Z6L|1|L8|C|126
6Z6L|1|L8|U|127
6Z6L|1|L8|C|128
6Z6L|1|L8|C|129

Current chains

Chain L8

5.8S rRNA

Nearby chains

Chain L5

Large subunit ribosomal RNA; LSU rRNA

Chain LX

60S ribosomal protein L23a