HL_6Z6M_018

3D structure

PDB id

6Z6M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of human 80S ribosomes bound to EBP1, eEF2 and SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GACUGUCCCCAGU

Length

13 nucleotides

Bulged bases

6Z6M|1|L5|G|1178, 6Z6M|1|L5|U|1179

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6Z6M|1|L5|G|1174
6Z6M|1|L5|A|1175
6Z6M|1|L5|C|1176
6Z6M|1|L5|U|1177
6Z6M|1|L5|G|1178
6Z6M|1|L5|U|1179
6Z6M|1|L5|C|1180
6Z6M|1|L5|C|1181
6Z6M|1|L5|C|1182
6Z6M|1|L5|C|1183
6Z6M|1|L5|A|1184
6Z6M|1|L5|G|1185
6Z6M|1|L5|U|1186

Current chains

Chain L5

28S rRNA

Nearby chains

Chain L7

5S ribosomal RNA; 5S rRNA

Chain LD

60S ribosomal protein L5

Chain LI

60S ribosomal protein L10-like