HL_6Z6M_074

3D structure

PDB id

6Z6M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of human 80S ribosomes bound to EBP1, eEF2 and SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGUGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Z6M_074 not in the Motif Atlas

Homologous match to HL_8C3A_065

Geometric discrepancy: 0.0831

The information below is about HL_8C3A_065

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6Z6M|1|L5|C|4540
6Z6M|1|L5|G|4541
6Z6M|1|L5|U|4542
6Z6M|1|L5|G|4543
6Z6M|1|L5|A|4544
6Z6M|1|L5|G|4545

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LA

60S ribosomal protein L8