HL_6Z6M_077

3D structure

PDB id

6Z6M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of human 80S ribosomes bound to EBP1, eEF2 and SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUGAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

6Z6M|1|L5|G|4694, 6Z6M|1|L5|C|4698

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Z6M_077 not in the Motif Atlas

Homologous match to HL_8C3A_068

Geometric discrepancy: 0.059

The information below is about HL_8C3A_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.9

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

6Z6M|1|L5|C|4688
6Z6M|1|L5|U|4689
6Z6M|1|L5|G|4690
6Z6M|1|L5|A|4691
6Z6M|1|L5|A|4692
6Z6M|1|L5|C|4693
6Z6M|1|L5|G|4694
6Z6M|1|L5|C|4695
6Z6M|1|L5|C|4696
6Z6M|1|L5|U|4697
6Z6M|1|L5|C|4698
6Z6M|1|L5|U|4699
6Z6M|1|L5|A|4700
6Z6M|1|L5|A|4701
6Z6M|1|L5|G|4702

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LH

60S ribosomal protein L9

Chain LO

60S ribosomal protein L13a

Chain Lm

Ubiquitin-60S ribosomal protein L40