HL_6Z6M_087

3D structure

PDB id

6Z6M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of human 80S ribosomes bound to EBP1, eEF2 and SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGUUCCUCC

Length

9 nucleotides

Bulged bases

6Z6M|1|L8|U|124

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Z6M_087 not in the Motif Atlas

Geometric match to HL_2Y9H_003

Geometric discrepancy: 0.1349

The information below is about HL_2Y9H_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

6Z6M|1|L8|G|121
6Z6M|1|L8|G|122
6Z6M|1|L8|U|123
6Z6M|1|L8|U|124
6Z6M|1|L8|C|125
6Z6M|1|L8|C|126
6Z6M|1|L8|U|127
6Z6M|1|L8|C|128
6Z6M|1|L8|C|129

Current chains

Chain L8

5.8S rRNA

Nearby chains

Chain L5

Large subunit ribosomal RNA; LSU rRNA

Chain LX

60S ribosomal protein L23a