HL_6Z6M_093

3D structure

PDB id

6Z6M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of human 80S ribosomes bound to EBP1, eEF2 and SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCCCCGUG

Length

8 nucleotides

Bulged bases

6Z6M|1|S2|C|324

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Z6M_093 not in the Motif Atlas

Geometric match to HL_8UO6_007

Geometric discrepancy: 0.2864

The information below is about HL_8UO6_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89167.2

Basepair signature

cWW-F-F

Number of instances in this motif group

22

Unit IDs

6Z6M|1|S2|C|322
6Z6M|1|S2|C|323
6Z6M|1|S2|C|324
6Z6M|1|S2|C|325
6Z6M|1|S2|C|326
6Z6M|1|S2|G|327
6Z6M|1|S2|U|328
6Z6M|1|S2|G|329

Current chains

Chain S2

18S rRNA

Nearby chains

Chain LW

60S ribosomal protein L24

Chain SG

40S ribosomal protein S6