HL_6Z6M_102

3D structure

PDB id

6Z6M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of human 80S ribosomes bound to EBP1, eEF2 and SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UCGGCGGGGCCCGA

Length

14 nucleotides

Bulged bases

6Z6M|1|S2|G|786, 6Z6M|1|S2|G|787, 6Z6M|1|S2|G|788

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Z6M_102 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.329

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.4

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

6Z6M|1|S2|U|749
6Z6M|1|S2|C|750
6Z6M|1|S2|G|751
6Z6M|1|S2|G|752
6Z6M|1|S2|C|753
6Z6M|1|S2|G|786
6Z6M|1|S2|G|787
6Z6M|1|S2|G|788
6Z6M|1|S2|G|789
6Z6M|1|S2|C|790
6Z6M|1|S2|C|791
6Z6M|1|S2|C|792
6Z6M|1|S2|G|793
6Z6M|1|S2|A|794

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SE

40S ribosomal protein S4, X isoform

Chain SG

40S ribosomal protein S6

Chain SH

40S ribosomal protein S7