HL_6Z6M_105
3D structure
- PDB id
- 6Z6M (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of human 80S ribosomes bound to EBP1, eEF2 and SERBP1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UAUUUUGUUGGUUUUCG
- Length
- 17 nucleotides
- Bulged bases
- 6Z6M|1|S2|G|891, 6Z6M|1|S2|U|899
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6Z6M_105 not in the Motif Atlas
- Geometric match to HL_7EQJ_004
- Geometric discrepancy: 0.313
- The information below is about HL_7EQJ_004
- Detailed Annotation
- tRNA D-loop
- Broad Annotation
- No text annotation
- Motif group
- HL_20490.1
- Basepair signature
- cWW-cWS-F
- Number of instances in this motif group
- 13
Unit IDs
6Z6M|1|S2|U|885
6Z6M|1|S2|A|886
6Z6M|1|S2|U|887
6Z6M|1|S2|U|888
6Z6M|1|S2|U|889
6Z6M|1|S2|U|890
6Z6M|1|S2|G|891
6Z6M|1|S2|U|892
6Z6M|1|S2|U|893
6Z6M|1|S2|G|894
6Z6M|1|S2|G|895
6Z6M|1|S2|U|896
6Z6M|1|S2|U|897
6Z6M|1|S2|U|898
6Z6M|1|S2|U|899
6Z6M|1|S2|C|900
6Z6M|1|S2|G|901
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain SG
- 40S ribosomal protein S6
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