HL_6Z6N_022

3D structure

PDB id

6Z6N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of human EBP1-80S ribosomes (focus on EBP1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGCGCUCG

Length

8 nucleotides

Bulged bases

6Z6N|1|L5|U|1410, 6Z6N|1|L5|C|1411

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Z6N_022 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.349

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.4

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

6Z6N|1|L5|C|1405
6Z6N|1|L5|G|1406
6Z6N|1|L5|C|1407
6Z6N|1|L5|G|1408
6Z6N|1|L5|C|1409
6Z6N|1|L5|U|1410
6Z6N|1|L5|C|1411
6Z6N|1|L5|G|1412

Current chains

Chain L5

28S rRNA

Nearby chains

Chain Lb

60S ribosomal protein L29