HL_6Z6N_033

3D structure

PDB id

6Z6N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of human EBP1-80S ribosomes (focus on EBP1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUGUAACAAC

Length

10 nucleotides

Bulged bases

6Z6N|1|L5|C|2011

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6Z6N|1|L5|G|2005
6Z6N|1|L5|U|2006
6Z6N|1|L5|G|2007
6Z6N|1|L5|U|2008
6Z6N|1|L5|A|2009
6Z6N|1|L5|A|2010
6Z6N|1|L5|C|2011
6Z6N|1|L5|A|2012
6Z6N|1|L5|A|2013
6Z6N|1|L5|C|2014

Current chains

Chain L5

28S rRNA

Nearby chains

Chain CB

Elongation factor 2

Chain Lm

Ubiquitin-60S ribosomal protein L40