HL_6Z6N_057

3D structure

PDB id

6Z6N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of human EBP1-80S ribosomes (focus on EBP1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

6Z6N|1|L5|A|3876, 6Z6N|1|L5|A|3877, 6Z6N|1|L5|C|3878

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Z6N_057 not in the Motif Atlas

Homologous match to HL_8C3A_051

Geometric discrepancy: 0.0521

The information below is about HL_8C3A_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.8

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

6Z6N|1|L5|G|3873
6Z6N|1|L5|G|3874
6Z6N|1|L5|G|3875
6Z6N|1|L5|A|3876
6Z6N|1|L5|A|3877
6Z6N|1|L5|C|3878
6Z6N|1|L5|G|3879
6Z6N|1|L5|G|3880
6Z6N|1|L5|G|3881
6Z6N|1|L5|C|3882

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain Le

60S ribosomal protein L32