HL_6Z6N_058

3D structure

PDB id

6Z6N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of human EBP1-80S ribosomes (focus on EBP1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AGACAUGAGAGGUGUAGAAUAAGUGGGAGGCCCGGGCCGCCGGUGAAAUACCACUACUCUGAUCGUUU

Length

68 nucleotides

Bulged bases

6Z6N|1|L5|A|3962, 6Z6N|1|L5|C|4038, 6Z6N|1|L5|U|4044, 6Z6N|1|L5|A|4053, 6Z6N|1|L5|C|4054, 6Z6N|1|L5|U|4058

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6Z6N|1|L5|A|3945
6Z6N|1|L5|G|3946
6Z6N|1|L5|A|3947
6Z6N|1|L5|C|3948
6Z6N|1|L5|A|3949
6Z6N|1|L5|U|3950
6Z6N|1|L5|G|3951
6Z6N|1|L5|A|3952
6Z6N|1|L5|G|3953
6Z6N|1|L5|A|3954
6Z6N|1|L5|G|3955
6Z6N|1|L5|G|3956
6Z6N|1|L5|U|3957
6Z6N|1|L5|G|3958
6Z6N|1|L5|U|3959
6Z6N|1|L5|A|3960
6Z6N|1|L5|G|3961
6Z6N|1|L5|A|3962
6Z6N|1|L5|A|3963
6Z6N|1|L5|U|3964
6Z6N|1|L5|A|3965
6Z6N|1|L5|A|3966
6Z6N|1|L5|G|3967
6Z6N|1|L5|U|3968
6Z6N|1|L5|G|3969
6Z6N|1|L5|G|3970
6Z6N|1|L5|G|3971
6Z6N|1|L5|A|3972
6Z6N|1|L5|G|3973
6Z6N|1|L5|G|3974
6Z6N|1|L5|C|3975
6Z6N|1|L5|C|3976
6Z6N|1|L5|C|3977
6Z6N|1|L5|G|4034
6Z6N|1|L5|G|4035
6Z6N|1|L5|G|4036
6Z6N|1|L5|C|4037
6Z6N|1|L5|C|4038
6Z6N|1|L5|G|4039
6Z6N|1|L5|C|4040
6Z6N|1|L5|C|4041
6Z6N|1|L5|G|4042
6Z6N|1|L5|G|4043
6Z6N|1|L5|U|4044
6Z6N|1|L5|G|4045
6Z6N|1|L5|A|4046
6Z6N|1|L5|A|4047
6Z6N|1|L5|A|4048
6Z6N|1|L5|U|4049
6Z6N|1|L5|A|4050
6Z6N|1|L5|C|4051
6Z6N|1|L5|C|4052
6Z6N|1|L5|A|4053
6Z6N|1|L5|C|4054
6Z6N|1|L5|U|4055
6Z6N|1|L5|A|4056
6Z6N|1|L5|C|4057
6Z6N|1|L5|U|4058
6Z6N|1|L5|C|4059
6Z6N|1|L5|U|4060
6Z6N|1|L5|G|4061
6Z6N|1|L5|A|4062
6Z6N|1|L5|U|4063
6Z6N|1|L5|C|4064
6Z6N|1|L5|G|4065
6Z6N|1|L5|U|4066
6Z6N|1|L5|U|4067
6Z6N|1|L5|U|4068

Current chains

Chain L5

28S rRNA

Nearby chains

Chain CC

Transfer RNA; tRNA

Chain Li

60S ribosomal protein L36

Chain Lz

60S ribosomal protein L10a

Chain SB

40S ribosomal protein S3a