HL_6Z6N_070

3D structure

PDB id

6Z6N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of human EBP1-80S ribosomes (focus on EBP1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UUGUUCA

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Z6N_070 not in the Motif Atlas

Homologous match to HL_5TBW_063

Geometric discrepancy: 0.1012

The information below is about HL_5TBW_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_36430.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

6Z6N|1|L5|U|4497
6Z6N|1|L5|U|4498
6Z6N|1|L5|G|4499
6Z6N|1|L5|U|4500
6Z6N|1|L5|U|4501
6Z6N|1|L5|C|4502
6Z6N|1|L5|A|4503

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LB

60S ribosomal protein L3