HL_6Z6N_086
3D structure
- PDB id
- 6Z6N (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of human EBP1-80S ribosomes (focus on EBP1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CGGCCGGUACAG
- Length
- 12 nucleotides
- Bulged bases
- 6Z6N|1|S2|C|73
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6Z6N_086 not in the Motif Atlas
- Geometric match to HL_361D_002
- Geometric discrepancy: 0.3436
- The information below is about HL_361D_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_13963.3
- Basepair signature
- cWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
6Z6N|1|S2|C|69
6Z6N|1|S2|G|70
6Z6N|1|S2|G|71
6Z6N|1|S2|C|72
6Z6N|1|S2|C|73
6Z6N|1|S2|G|74
6Z6N|1|S2|G|75
6Z6N|1|S2|U|76
6Z6N|1|S2|A|77
6Z6N|1|S2|C|78
6Z6N|1|S2|A|79
6Z6N|1|S2|G|80
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain LW
- 60S ribosomal protein L24
- Chain SG
- 40S ribosomal protein S6
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