HL_6Z6N_122

3D structure

PDB id

6Z6N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of human EBP1-80S ribosomes (focus on EBP1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UUGGGGCCGAAACGAUCUCA

Length

20 nucleotides

Bulged bases

6Z6N|1|L5|U|1757, 6Z6N|1|L5|C|1763, 6Z6N|1|L5|A|1765, 6Z6N|1|L5|A|1766, 6Z6N|1|L5|A|1767, 6Z6N|1|L5|G|1769

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6Z6N|1|L5|U|1756
6Z6N|1|L5|U|1757
6Z6N|1|L5|G|1758
6Z6N|1|L5|G|1759
6Z6N|1|L5|G|1760
6Z6N|1|L5|G|1761
6Z6N|1|L5|C|1762
6Z6N|1|L5|C|1763
6Z6N|1|L5|G|1764
6Z6N|1|L5|A|1765
6Z6N|1|L5|A|1766
6Z6N|1|L5|A|1767
6Z6N|1|L5|C|1768
6Z6N|1|L5|G|1769
6Z6N|1|L5|A|1770
6Z6N|1|L5|U|1771
6Z6N|1|L5|C|1772
6Z6N|1|L5|U|1773
6Z6N|1|L5|C|1774
6Z6N|1|L5|A|1775

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LD

60S ribosomal protein L5

Chain LI

60S ribosomal protein L10-like

Chain SP

40S ribosomal protein S15