HL_6Z6N_123
3D structure
- PDB id
- 6Z6N (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of human EBP1-80S ribosomes (focus on EBP1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GACAUGAGAGGUGUAGAAUAAGUGGGAGGCCCCCGGCGCCCCCCCGGUGUCCCCGCGAGGGGCCCGGGGCGGGGUCCGCCGGCCCUGCGGGCCGCCGGUGAAAUACCACUACUCUGAUCGUU
- Length
- 122 nucleotides
- Bulged bases
- 6Z6N|1|L5|A|3947, 6Z6N|1|L5|A|3962, 6Z6N|1|L5|G|3969, 6Z6N|1|L5|C|3976, 6Z6N|1|L5|C|3977, 6Z6N|1|L5|C|3978, 6Z6N|1|L5|C|3979, 6Z6N|1|L5|G|3980, 6Z6N|1|L5|G|3981, 6Z6N|1|L5|C|3982, 6Z6N|1|L5|G|3983, 6Z6N|1|L5|C|3984, 6Z6N|1|L5|C|3985, 6Z6N|1|L5|C|3986, 6Z6N|1|L5|C|3987, 6Z6N|1|L5|C|3988, 6Z6N|1|L5|C|3989, 6Z6N|1|L5|C|3990, 6Z6N|1|L5|G|3991, 6Z6N|1|L5|G|3992, 6Z6N|1|L5|U|3993, 6Z6N|1|L5|G|3994, 6Z6N|1|L5|U|3995, 6Z6N|1|L5|C|3996, 6Z6N|1|L5|C|3997, 6Z6N|1|L5|C|3998, 6Z6N|1|L5|C|3999, 6Z6N|1|L5|G|4000, 6Z6N|1|L5|C|4001, 6Z6N|1|L5|G|4002, 6Z6N|1|L5|A|4003, 6Z6N|1|L5|G|4004, 6Z6N|1|L5|G|4005, 6Z6N|1|L5|G|4006, 6Z6N|1|L5|G|4007, 6Z6N|1|L5|C|4008, 6Z6N|1|L5|C|4009, 6Z6N|1|L5|C|4010, 6Z6N|1|L5|G|4011, 6Z6N|1|L5|G|4012, 6Z6N|1|L5|G|4013, 6Z6N|1|L5|G|4014, 6Z6N|1|L5|C|4015, 6Z6N|1|L5|G|4016, 6Z6N|1|L5|G|4017, 6Z6N|1|L5|G|4018, 6Z6N|1|L5|G|4019, 6Z6N|1|L5|U|4020, 6Z6N|1|L5|C|4021, 6Z6N|1|L5|C|4022, 6Z6N|1|L5|G|4023, 6Z6N|1|L5|C|4024, 6Z6N|1|L5|C|4025, 6Z6N|1|L5|G|4026, 6Z6N|1|L5|G|4027, 6Z6N|1|L5|C|4028, 6Z6N|1|L5|C|4029, 6Z6N|1|L5|C|4030, 6Z6N|1|L5|U|4031, 6Z6N|1|L5|G|4032, 6Z6N|1|L5|C|4033, 6Z6N|1|L5|G|4034, 6Z6N|1|L5|G|4035, 6Z6N|1|L5|C|4038, 6Z6N|1|L5|G|4039, 6Z6N|1|L5|U|4044, 6Z6N|1|L5|A|4047, 6Z6N|1|L5|C|4051, 6Z6N|1|L5|C|4052, 6Z6N|1|L5|A|4053, 6Z6N|1|L5|C|4054, 6Z6N|1|L5|U|4058, 6Z6N|1|L5|C|4059
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6Z6N|1|L5|G|3946
6Z6N|1|L5|A|3947
6Z6N|1|L5|C|3948
6Z6N|1|L5|A|3949
6Z6N|1|L5|U|3950
6Z6N|1|L5|G|3951
6Z6N|1|L5|A|3952
6Z6N|1|L5|G|3953
6Z6N|1|L5|A|3954
6Z6N|1|L5|G|3955
6Z6N|1|L5|G|3956
6Z6N|1|L5|U|3957
6Z6N|1|L5|G|3958
6Z6N|1|L5|U|3959
6Z6N|1|L5|A|3960
6Z6N|1|L5|G|3961
6Z6N|1|L5|A|3962
6Z6N|1|L5|A|3963
6Z6N|1|L5|U|3964
6Z6N|1|L5|A|3965
6Z6N|1|L5|A|3966
6Z6N|1|L5|G|3967
6Z6N|1|L5|U|3968
6Z6N|1|L5|G|3969
6Z6N|1|L5|G|3970
6Z6N|1|L5|G|3971
6Z6N|1|L5|A|3972
6Z6N|1|L5|G|3973
6Z6N|1|L5|G|3974
6Z6N|1|L5|C|3975
6Z6N|1|L5|C|3976
6Z6N|1|L5|C|3977
6Z6N|1|L5|C|3978
6Z6N|1|L5|C|3979
6Z6N|1|L5|G|3980
6Z6N|1|L5|G|3981
6Z6N|1|L5|C|3982
6Z6N|1|L5|G|3983
6Z6N|1|L5|C|3984
6Z6N|1|L5|C|3985
6Z6N|1|L5|C|3986
6Z6N|1|L5|C|3987
6Z6N|1|L5|C|3988
6Z6N|1|L5|C|3989
6Z6N|1|L5|C|3990
6Z6N|1|L5|G|3991
6Z6N|1|L5|G|3992
6Z6N|1|L5|U|3993
6Z6N|1|L5|G|3994
6Z6N|1|L5|U|3995
6Z6N|1|L5|C|3996
6Z6N|1|L5|C|3997
6Z6N|1|L5|C|3998
6Z6N|1|L5|C|3999
6Z6N|1|L5|G|4000
6Z6N|1|L5|C|4001
6Z6N|1|L5|G|4002
6Z6N|1|L5|A|4003
6Z6N|1|L5|G|4004
6Z6N|1|L5|G|4005
6Z6N|1|L5|G|4006
6Z6N|1|L5|G|4007
6Z6N|1|L5|C|4008
6Z6N|1|L5|C|4009
6Z6N|1|L5|C|4010
6Z6N|1|L5|G|4011
6Z6N|1|L5|G|4012
6Z6N|1|L5|G|4013
6Z6N|1|L5|G|4014
6Z6N|1|L5|C|4015
6Z6N|1|L5|G|4016
6Z6N|1|L5|G|4017
6Z6N|1|L5|G|4018
6Z6N|1|L5|G|4019
6Z6N|1|L5|U|4020
6Z6N|1|L5|C|4021
6Z6N|1|L5|C|4022
6Z6N|1|L5|G|4023
6Z6N|1|L5|C|4024
6Z6N|1|L5|C|4025
6Z6N|1|L5|G|4026
6Z6N|1|L5|G|4027
6Z6N|1|L5|C|4028
6Z6N|1|L5|C|4029
6Z6N|1|L5|C|4030
6Z6N|1|L5|U|4031
6Z6N|1|L5|G|4032
6Z6N|1|L5|C|4033
6Z6N|1|L5|G|4034
6Z6N|1|L5|G|4035
6Z6N|1|L5|G|4036
6Z6N|1|L5|C|4037
6Z6N|1|L5|C|4038
6Z6N|1|L5|G|4039
6Z6N|1|L5|C|4040
6Z6N|1|L5|C|4041
6Z6N|1|L5|G|4042
6Z6N|1|L5|G|4043
6Z6N|1|L5|U|4044
6Z6N|1|L5|G|4045
6Z6N|1|L5|A|4046
6Z6N|1|L5|A|4047
6Z6N|1|L5|A|4048
6Z6N|1|L5|U|4049
6Z6N|1|L5|A|4050
6Z6N|1|L5|C|4051
6Z6N|1|L5|C|4052
6Z6N|1|L5|A|4053
6Z6N|1|L5|C|4054
6Z6N|1|L5|U|4055
6Z6N|1|L5|A|4056
6Z6N|1|L5|C|4057
6Z6N|1|L5|U|4058
6Z6N|1|L5|C|4059
6Z6N|1|L5|U|4060
6Z6N|1|L5|G|4061
6Z6N|1|L5|A|4062
6Z6N|1|L5|U|4063
6Z6N|1|L5|C|4064
6Z6N|1|L5|G|4065
6Z6N|1|L5|U|4066
6Z6N|1|L5|U|4067
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain CC
- Transfer RNA; tRNA
- Chain Li
- 60S ribosomal protein L36
- Chain Lz
- 60S ribosomal protein L10a
- Chain SB
- 40S ribosomal protein S3a
Coloring options: