HL_6ZJ3_005

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

GCAACC(PSU)C

Length

8 nucleotides

Bulged bases

6ZJ3|1|LB|C|233

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZJ3|1|LB|G|228
6ZJ3|1|LB|C|229
6ZJ3|1|LB|A|230
6ZJ3|1|LB|A|231
6ZJ3|1|LB|C|232
6ZJ3|1|LB|C|233
6ZJ3|1|LB|PSU|234
6ZJ3|1|LB|C|235

Current chains

Chain LB

LSU rRNA chain 1

Nearby chains

Chain LC

Large subunit ribosomal RNA; LSU rRNA

Chain LI

Large subunit ribosomal RNA; LSU rRNA

Chain LX

Ribosomal protein eL13

Chain La

Ribosomal protein uL15

Chain Lb

Ribosomal protein eL15

Chain Lx

Ribosomal protein eL36