HL_6ZJ3_006
3D structure
- PDB id
- 6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.15 Å
Loop
- Sequence
- UGGCGAA
- Length
- 7 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6ZJ3_006 not in the Motif Atlas
- Homologous match to HL_8C3A_003
- Geometric discrepancy: 0.0737
- The information below is about HL_8C3A_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_67216.9
- Basepair signature
- cWW-cWW-F-tSH
- Number of instances in this motif group
- 9
Unit IDs
6ZJ3|1|LB|U|250
6ZJ3|1|LB|G|251
6ZJ3|1|LB|G|252
6ZJ3|1|LB|C|253
6ZJ3|1|LB|G|254
6ZJ3|1|LB|A|255
6ZJ3|1|LB|A|256
Current chains
- Chain LB
- LSU rRNA chain 1
Nearby chains
- Chain L4
- Ribosomal protein eL43
- Chain LC
- Large subunit ribosomal RNA; LSU rRNA
- Chain LE
- Large subunit ribosomal RNA; LSU rRNA
- Chain LI
- Large subunit ribosomal RNA; LSU rRNA
- Chain LX
- Ribosomal protein eL13
- Chain La
- Ribosomal protein uL15
- Chain Le
- Ribosomal protein eL18
- Chain S4
- Transfer RNA; tRNA
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