HL_6ZJ3_007

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

CACGG

Length

5 nucleotides

Bulged bases

6ZJ3|1|LB|C|274

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZJ3_007 not in the Motif Atlas

Geometric match to HL_4V9F_003

Geometric discrepancy: 0.1241

The information below is about HL_4V9F_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

6ZJ3|1|LB|C|272
6ZJ3|1|LB|A|273
6ZJ3|1|LB|C|274
6ZJ3|1|LB|G|275
6ZJ3|1|LB|G|276

Current chains

Chain LB

LSU rRNA chain 1

Nearby chains

Chain LC

Large subunit ribosomal RNA; LSU rRNA

Chain LX

Ribosomal protein eL13

Chain Lb

Ribosomal protein eL15

Chain Lp

Ribosomal protein uL29