HL_6ZJ3_008

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

A(PSU)CGGCU(PSU)U

Length

9 nucleotides

Bulged bases

6ZJ3|1|LC|G|305

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZJ3|1|LC|A|301
6ZJ3|1|LC|PSU|302
6ZJ3|1|LC|C|303
6ZJ3|1|LC|G|304
6ZJ3|1|LC|G|305
6ZJ3|1|LC|C|306
6ZJ3|1|LC|U|307
6ZJ3|1|LC|PSU|308
6ZJ3|1|LC|U|309

Current chains

Chain LC

LSU rRNA chain 2

Nearby chains

Chain LA

5.8S ribosomal RNA; 5.8S rRNA

Chain Lb

Ribosomal protein eL15

Chain Lp

Ribosomal protein uL29

Chain Ly

Ribosomal protein eL37