HL_6ZJ3_009

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

CUGGAAUG

Length

8 nucleotides

Bulged bases

6ZJ3|1|LC|U|392

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZJ3_009 not in the Motif Atlas

Homologous match to HL_8C3A_005

Geometric discrepancy: 0.1107

The information below is about HL_8C3A_005

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_58705.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

6ZJ3|1|LC|C|386
6ZJ3|1|LC|U|387
6ZJ3|1|LC|G|388
6ZJ3|1|LC|G|389
6ZJ3|1|LC|A|390
6ZJ3|1|LC|A|391
6ZJ3|1|LC|U|392
6ZJ3|1|LC|G|393

Current chains

Chain LC

LSU rRNA chain 2

Nearby chains

Chain LF

Large subunit ribosomal RNA; LSU rRNA

Chain Ll

Ribosomal protein uL24

Chain Lu

Ribosomal protein eL32