HL_6ZJ3_013
3D structure
- PDB id
- 6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.15 Å
Loop
- Sequence
- CGUGUAUCCG
- Length
- 10 nucleotides
- Bulged bases
- 6ZJ3|1|LC|G|509, 6ZJ3|1|LC|U|510
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6ZJ3_013 not in the Motif Atlas
- Homologous match to HL_8C3A_009
- Geometric discrepancy: 0.117
- The information below is about HL_8C3A_009
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_15076.1
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 10
Unit IDs
6ZJ3|1|LC|C|508
6ZJ3|1|LC|G|509
6ZJ3|1|LC|U|510
6ZJ3|1|LC|G|511
6ZJ3|1|LC|U|512
6ZJ3|1|LC|A|513
6ZJ3|1|LC|U|514
6ZJ3|1|LC|C|515
6ZJ3|1|LC|C|516
6ZJ3|1|LC|G|517
Current chains
- Chain LC
- LSU rRNA chain 2
Nearby chains
- Chain L4
- Ribosomal protein eL43
- Chain LB
- Large subunit ribosomal RNA; LSU rRNA
- Chain LH
- Large subunit ribosomal RNA; LSU rRNA
- Chain LI
- Large subunit ribosomal RNA; LSU rRNA
- Chain La
- Ribosomal protein uL15
- Chain Lb
- Ribosomal protein eL15
- Chain Lx
- Ribosomal protein eL36
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