HL_6ZJ3_014
3D structure
- PDB id
- 6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.15 Å
Loop
- Sequence
- GAGUGA(PSU)C
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6ZJ3_014 not in the Motif Atlas
- Geometric match to HL_7MRL_001
- Geometric discrepancy: 0.3431
- The information below is about HL_7MRL_001
- Detailed Annotation
- tRNA D-loop
- Broad Annotation
- No text annotation
- Motif group
- HL_20490.1
- Basepair signature
- cWW-cWS-F
- Number of instances in this motif group
- 13
Unit IDs
6ZJ3|1|LC|G|561
6ZJ3|1|LC|A|562
6ZJ3|1|LC|G|563
6ZJ3|1|LC|U|564
6ZJ3|1|LC|G|565
6ZJ3|1|LC|A|566
6ZJ3|1|LC|PSU|567
6ZJ3|1|LC|C|568
Current chains
- Chain LC
- LSU rRNA chain 2
Nearby chains
- Chain L1
- Ribosomal protein eL39
- Chain LE
- Large subunit ribosomal RNA; LSU rRNA
- Chain LH
- Large subunit ribosomal RNA; LSU rRNA
- Chain LR
- Ribosomal protein uL4
- Chain Ly
- Ribosomal protein eL37
Coloring options: