HL_6ZJ3_018
3D structure
- PDB id
- 6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.15 Å
Loop
- Sequence
- GCUUCCAAAAC
- Length
- 11 nucleotides
- Bulged bases
- 6ZJ3|1|LE|A|981
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6ZJ3_018 not in the Motif Atlas
- Geometric match to HL_4WF9_011
- Geometric discrepancy: 0.2609
- The information below is about HL_4WF9_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75660.7
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 22
Unit IDs
6ZJ3|1|LE|G|972
6ZJ3|1|LE|C|973
6ZJ3|1|LE|U|974
6ZJ3|1|LE|U|977
6ZJ3|1|LE|C|978
6ZJ3|1|LE|C|979
6ZJ3|1|LE|A|980
6ZJ3|1|LE|A|981
6ZJ3|1|LE|A|982
6ZJ3|1|LE|A|983
6ZJ3|1|LE|C|984
Current chains
- Chain LE
- LSU rRNA chain 4
Nearby chains
- Chain LA
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LB
- Large subunit ribosomal RNA; LSU rRNA
- Chain LC
- Large subunit ribosomal RNA; LSU rRNA
- Chain LR
- Ribosomal protein uL4
- Chain LX
- Ribosomal protein eL13
- Chain Lb
- Ribosomal protein eL15
- Chain Ll
- Ribosomal protein uL24
Coloring options: