HL_6ZJ3_020

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

GGCUAGUC

Length

8 nucleotides

Bulged bases

6ZJ3|1|LE|A|1030

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZJ3_020 not in the Motif Atlas

Geometric match to HL_1FIR_001

Geometric discrepancy: 0.3642

The information below is about HL_1FIR_001

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20811.1

Basepair signature

cWW-cWS-F

Number of instances in this motif group

18

Unit IDs

6ZJ3|1|LE|G|1026
6ZJ3|1|LE|G|1027
6ZJ3|1|LE|C|1028
6ZJ3|1|LE|U|1029
6ZJ3|1|LE|A|1030
6ZJ3|1|LE|G|1031
6ZJ3|1|LE|U|1032
6ZJ3|1|LE|C|1033

Current chains

Chain LE

LSU rRNA chain 4

Nearby chains

Chain Le

Ribosomal protein eL18