HL_6ZJ3_021

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

CAGUG

Length

5 nucleotides

Bulged bases

6ZJ3|1|LE|A|1063, 6ZJ3|1|LE|U|1065

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZJ3_021 not in the Motif Atlas

Geometric match to HL_4WF9_011

Geometric discrepancy: 0.2874

The information below is about HL_4WF9_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.9

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

6ZJ3|1|LE|C|1062
6ZJ3|1|LE|A|1063
6ZJ3|1|LE|G|1064
6ZJ3|1|LE|U|1065
6ZJ3|1|LE|G|1066

Current chains

Chain LE

LSU rRNA chain 4

Nearby chains

Chain LI

Large subunit ribosomal RNA; LSU rRNA

Chain LX

Ribosomal protein eL13

Chain La

Ribosomal protein uL15

Chain Lx

Ribosomal protein eL36