HL_6ZJ3_022

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZJ3_022 not in the Motif Atlas

Homologous match to HL_5TBW_019

Geometric discrepancy: 0.108

The information below is about HL_5TBW_019

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6ZJ3|1|LE|G|1143
6ZJ3|1|LE|G|1144
6ZJ3|1|LE|A|1145
6ZJ3|1|LE|A|1146
6ZJ3|1|LE|A|1147
6ZJ3|1|LE|C|1148

Current chains

Chain LE

LSU rRNA chain 4

Nearby chains

Chain L5

Ribosomal protein eL42

Chain S1

Small subunit ribosomal RNA; SSU rRNA

Chain ST

Ribosomal protein uS15

Chain SU

Ribosomal protein uS17